NFDI4Health Local Data Hubs for Finding and Accessing Health Data

Making Distributed Data Accessible Through a SEEK-Based Platform

Authors

DOI:

https://doi.org/10.52825/cordi.v1i.375

Keywords:

Life Sciences, Local Data Hub, FAIRDOM, SEEK, FAIR data, Enabling RDM, Data Sharing

Abstract

To support federated data structuring and sharing for sensitive health data from clinical trial, epidemiological and public health studies in the context of the German National Research Data Infrastructure for Personal Health Data (NFDI4Health), we have developed Local Data Hubs (LDHs) based on the FAIRDOM-SEEK platform. Those LDHs connect to the German Central Health Study Hub (CSH) to make the health data searchable and findable. This decentralised approach supports researchers to make health studies with their data FAIR (Findable, Accessible, Interoperable and Reusable), and at the same time fully preserves data protection for sensitive data.

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References

Fluck, J., Lindstädt, B., Ahrens, W., Beyan, O., Buchner , B., Darms, J., Depping, R., Dierkes, J., Neuhausen, H., Müller, W., Zeeb, H., Golebiewski, M., Löffler, M., Löbe, M., Meineke, F., Klammt, S., Fröhlich, H., Hahn, H., Schulze, M., Pischon, T., Nöth-lings, U., Sax, U., Kusch, H., Grabenhenrich, L., Schmidt, C.O., Waltemath, D., Sem-ler, S., Gehrke, J., Kirsten, T., Praßer, F., Thun, S., Wieler, L., Pigeot, I., “NFDI4Health – Nationale Forschungsdateninfrastruktur für personenbezogene Gesundheitsdaten”, BFDM, Nr. 2, S. 72–85, Juli 2021, doi: https://doi.org/10.17192/bfdm.2021.2.8331

A. Shutsko, C. O. Schmidt, S. A. I. Klopfenstein, J. Darms, M. Golebiewski, C. N. Vorisek, H. Abaza, NFDI4Health Task Force COVID-19, NFDI4Health. “Metadata schema of the NFDI4Health and the NFDI4Health Task Force COVID-19 (V3_0).” doi: https://doi.org/10.4126/FRL01-006439110

T. Kirsten, F.A. Meineke, H. Loeffler-Wirth, C. Beger, A. Uciteli, S. Stäubert, M. Löbe, R. Hänsel, F.G. Rauscher, J. Schuster, T. Peschel, H. Herre, J. Wagner, S. Zachari-ae, C. Engel, M. Scholz, E. Rahm, H. Binder, M. Loeffler, LHA team, “The Leipzig Health Atlas - An Open Platform to Present, Archive, and Share Biomedical Data, Analyses, and Models Online”, Methods Inf Med. 61, S 02, e103-e115, December 2022, doi: https://doi.org/10.1055/a-1914-1985

“The Leipzig Health Atlas”: https://www.health-atlas.de (accessed 21 April 2023)

K. Wolstencroft, S. Owen, O. Krebs, Q. Nguyen, N.J. Stanford, M. Golebiewski, A. Weidemann, M. Bittkowski, L. An, D. Shockley, J.L. Snoep, W. Mueller, C. Goble, “SEEK: a systems biology data and model management platform”, BMC Systems Biol-ogy, 9, 33, July 2015, doi: https://doi.org/10.1186/s12918-015-0174-y

“FAIRDOM-SEEK: An open source web-based cataloguing and commons platform.” https://seek4science.org/(accessed 21 April 2023)

“FAIRDOM - A Consortium of Services for Research Data Management and More”: https://fair-dom.org(accessed 21 April 2023)

K. Wolstencroft, O. Krebs, J.L. Snoep, Stanford, N.J. Bacall F, M. Golebiewski, R. Kuzyakiv, Q. Nguyen, S. Owen, S. Soiland-Reyes, J. Straszewski, D.D. Van Niekerk, A.R. Williams, L. Malmström, B. Rinn, W. Müller, C. Goble, “FAIRDOMHub: a reposito-ry and collaboration environment for sharing systems biology research”, Nucleic Acids Research, 45, D1, pp. D404-D407, November 2016, doi: https://doi.org/10.1093/nar/gkw1032

“ISA Commons”: https://www.isacommons.org (accessed 21 April 2023)

“HL7 FHIR (Fast Healthcare Interoperability Resource)”: https://www.hl7.org/fhir/ (ac-cessed 25 April 2023)

S. A. I. Klopfenstein, C. N. Vorisek, A. Shutsko, M. Lehne, J. Sass, M. Löbe, & C.O. Schmidt, S. Thun, “Fast Healthcare Interoperability Resources (FHIR) in a FAIR Metadata Registry for COVID-19 Research”, Stud Health Technol Inform. 287, pp. 73-77, November 2021, doi: https://doi.org/10.3233/SHTI210817

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Published

2023-09-07

How to Cite

Meineke, F., Golebiewski, M., Hu, X., Kirsten, T., Löbe, M., Klammt, S., … Müller, W. (2023). NFDI4Health Local Data Hubs for Finding and Accessing Health Data: Making Distributed Data Accessible Through a SEEK-Based Platform. Proceedings of the Conference on Research Data Infrastructure , 1. https://doi.org/10.52825/cordi.v1i.375
Received 2023-04-26
Accepted 2023-06-29
Published 2023-09-07

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